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  • Pims.open Throws "UnkownFormat Error" with "Invalid Argument" On One Machine But Not on Another

    12 août 2021, par KaceBellamy

    I'm trying to do some video processing for a physics experiment, and I want to do it on my much more powerful Windows desktop computer as opposed to my Mac laptop.

    


    The following code works like a dream when run as a Jupyter notebook on my Mac :

    


    import matplotlib as mpl
from mpl_toolkits import mplot3d
import pims
import trackpy as tp 

@pims.pipeline
def gray(image):
    return image[:, :, 1]  # Take just the green channel

frames = gray(pims.open('output.mp4'))


    


    but on my Windows machine I get this error :

    


    ---------------------------------------------------------------------------&#xA;UnknownFormatError                        Traceback (most recent call last)&#xA;~\AppData\Local\Temp/ipykernel_12152/704954007.py in <module>&#xA;      1 #Actually converts the video. Might be VERY processor intensive... or not?&#xA;----> 2 frames = gray(pims.open(&#x27;output.mp4&#x27;)) #Make the File Name whatever file you like!&#xA;&#xA;~\miniconda3\lib\site-packages\pims\api.py in open(sequence, **kwargs)&#xA;    207             warn(message)&#xA;    208             exceptions &#x2B;= message &#x2B; &#x27;\n&#x27;&#xA;--> 209     raise UnknownFormatError("All handlers returned exceptions:\n" &#x2B; exceptions)&#xA;    210 &#xA;    211 &#xA;&#xA;UnknownFormatError: All handlers returned exceptions:&#xA;<class> errored: [Errno 22] Invalid argument: &#x27;output.mp4&#x27;&#xA;<class> errored: [Errno 22] Invalid argument: &#x27;output.mp4&#x27;&#xA;<class> errored: Could not load meta information&#xA;=== stderr ===&#xA;&#xA;ffmpeg version 4.2.2 Copyright (c) 2000-2019 the FFmpeg developers&#xA;  built with gcc 9.2.1 (GCC) 20200122&#xA;  configuration: --enable-gpl --enable-version3 --enable-sdl2 --enable-fontconfig --enable-gnutls --enable-iconv --enable-libass --enable-libdav1d --enable-libbluray --enable-libfreetype --enable-libmp3lame --enable-libopencore-amrnb --enable-libopencore-amrwb --enable-libopenjpeg --enable-libopus --enable-libshine --enable-libsnappy --enable-libsoxr --enable-libtheora --enable-libtwolame --enable-libvpx --enable-libwavpack --enable-libwebp --enable-libx264 --enable-libx265 --enable-libxml2 --enable-libzimg --enable-lzma --enable-zlib --enable-gmp --enable-libvidstab --enable-libvorbis --enable-libvo-amrwbenc --enable-libmysofa --enable-libspeex --enable-libxvid --enable-libaom --enable-libmfx --enable-amf --enable-ffnvcodec --enable-cuvid --enable-d3d11va --enable-nvenc --enable-nvdec --enable-dxva2 --enable-avisynth --enable-libopenmpt&#xA;  libavutil      56. 31.100 / 56. 31.100&#xA;  libavcodec     58. 54.100 / 58. 54.100&#xA;  libavformat    58. 29.100 / 58. 29.100&#xA;  libavdevice    58.  8.100 / 58.  8.100&#xA;  libavfilter     7. 57.100 /  7. 57.100&#xA;  libswscale      5.  5.100 /  5.  5.100&#xA;  libswresample   3.  5.100 /  3.  5.100&#xA;  libpostproc    55.  5.100 / 55.  5.100&#xA;C:\Users\Callum\OneDrive - The University of Chicago\output.mp4: Invalid argument&#xA;<class> errored: MoviePy error: failed to read the duration of file output.mp4.&#xA;Here are the file infos returned by ffmpeg:&#xA;&#xA;ffmpeg version 4.2.2 Copyright (c) 2000-2019 the FFmpeg developers&#xA;  built with gcc 9.2.1 (GCC) 20200122&#xA;  configuration: --enable-gpl --enable-version3 --enable-sdl2 --enable-fontconfig --enable-gnutls --enable-iconv --enable-libass --enable-libdav1d --enable-libbluray --enable-libfreetype --enable-libmp3lame --enable-libopencore-amrnb --enable-libopencore-amrwb --enable-libopenjpeg --enable-libopus --enable-libshine --enable-libsnappy --enable-libsoxr --enable-libtheora --enable-libtwolame --enable-libvpx --enable-libwavpack --enable-libwebp --enable-libx264 --enable-libx265 --enable-libxml2 --enable-libzimg --enable-lzma --enable-zlib --enable-gmp --enable-libvidstab --enable-libvorbis --enable-libvo-amrwbenc --enable-libmysofa --enable-libspeex --enable-libxvid --enable-libaom --enable-libmfx --enable-amf --enable-ffnvcodec --enable-cuvid --enable-d3d11va --enable-nvenc --enable-nvdec --enable-dxva2 --enable-avisynth --enable-libopenmpt&#xA;  libavutil      56. 31.100 / 56. 31.100&#xA;  libavcodec     58. 54.100 / 58. 54.100&#xA;  libavformat    58. 29.100 / 58. 29.100&#xA;  libavdevice    58.  8.100 / 58.  8.100&#xA;  libavfilter     7. 57.100 /  7. 57.100&#xA;  libswscale      5.  5.100 /  5.  5.100&#xA;  libswresample   3.  5.100 /  3.  5.100&#xA;  libpostproc    55.  5.100 / 55.  5.100&#xA;output.mp4: Invalid argument&#xA;</class></class></class></class></module>

    &#xA;

    output.mp4 is just a run of the mill video file taken on a CCD camera ; I've tried converting it to a .MOV, I've tried other video files taken on different cameras, and I've tried running the file through FFmpeg to impose a 30 fps framerate ; everything I've tried works fine on my Mac and throws the above error on my Windows machine.

    &#xA;

    For reference, I installed necessary packages for this code on both machines this morning, so it should all be up to date and the same on both.

    &#xA;

    Any ideas as to what's up ? Thanks !

    &#xA;

  • How to install dense trajectory without sudoers permission

    7 février 2019, par Albe

    I’m stuck for a week trying to install iDT(https://github.com/chuckcho/iDT) in a server hosted by university in which I don’t have root permissions. (VERSION=12.04.5 LTS)

    I tried to install the 2 main libraries (opencv and ffmpeg) following part(different versions) of this tutorial : http://dridini.blogspot.com/

    I managed (I think) to install the libraries in local :

    ffmpeg -version
    ffmpeg version N-93084-g835ab35 Copyright (c) 2000-2019 the FFmpeg developers
    built with gcc 4.6 (Ubuntu/Linaro 4.6.3-1ubuntu5)
    configuration: --prefix=/home/XXXXX/ffmpeg_build --extra-cflags=-I/home/XXXXX/ffmpeg_build/include --extra-ldflags=-L/home/XXXXX/ffmpeg_build/lib --bindir=/home/XXXXX/bin --enable-gpl --enable-nonfree --enable-libfdk-aac --enable-libmp3lame --enable-libvorbis --enable-libx264 --enable-pic --enable-shared
    libavutil      56. 26.100 / 56. 26.100
    libavcodec     58. 46.100 / 58. 46.100
    libavformat    58. 26.100 / 58. 26.100
    libavdevice    58.  6.101 / 58.  6.101
    libavfilter     7. 48.100 /  7. 48.100
    libswscale      5.  4.100 /  5.  4.100
    libswresample   3.  4.100 /  3.  4.100
    libpostproc    55.  4.100 / 55.  4.100

    pkg-config --modversion opencv
    2.4.13.5

    I exported the LD_LIBRARY_PATH where all .so are.(I cannot perform ldconfig after)
    But when I try to make this is the result :

    g++ -L/home/chuck/opencv-2.4.11-cuda7.5/lib -L/opt/lib -pipe -Wall -O3 -ggdb -o release/DenseTrackStab  -lopencv_core -lopencv_highgui -lopencv_video -lopencv_imgproc -lopencv_calib3d -lopencv_features2d -lopencv_nonfree -lopencv_ocl -lavformat -lavdevice -lavutil -lavcodec -lswscale
    /usr/bin/ld: cannot find -lopencv_core
    /usr/bin/ld: cannot find -lopencv_highgui
    /usr/bin/ld: cannot find -lopencv_video
    /usr/bin/ld: cannot find -lopencv_imgproc
    /usr/bin/ld: cannot find -lopencv_calib3d
    /usr/bin/ld: cannot find -lopencv_features2d
    /usr/bin/ld: cannot find -lopencv_nonfree
    /usr/bin/ld: cannot find -lopencv_ocl
    /usr/bin/ld: cannot find -lavformat
    /usr/bin/ld: cannot find -lavdevice
    /usr/bin/ld: cannot find -lavutil
    /usr/bin/ld: cannot find -lavcodec
    /usr/bin/ld: cannot find -lswscale
    collect2: ld returned 1 exit status
    make: *** [release/DenseTrackStab] Error 1

    I tried to modify the makeFile in order to add there the path or typing make with ldflag ( make "LDFLAGS=-L/$HOME/lib/opencv-2.4.13.5/lib/ -L/$HOME/ffmpeg_build/lib") giving me the same result :

    g++ -L/home/XXXXX/opencv-2.4.13.5/release/lib -L/opt/lib -pipe -Wall -O3 -ggdb -o release/DenseTrackStab  -lopencv_core -lopencv_highgui -lopencv_video -lopencv_imgproc -lopencv_calib3d -lopencv_features2d -lopencv_nonfree -lopencv_ocl -lavformat -lavdevice -lavutil -lavcodec -lswscale
    /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 0 has invalid symbol index 10
    /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 1 has invalid symbol index 11
    /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 2 has invalid symbol index 2
    /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 3 has invalid symbol index 2
    /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 4 has invalid symbol index 10
    /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 5 has invalid symbol index 12
    /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 6 has invalid symbol index 12
    /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 7 has invalid symbol index 12
    /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 8 has invalid symbol index 2
    /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 9 has invalid symbol index 2

    This is the original Makefile

    # custom opencv
    OPENCV_INC := /home/chuck/opencv-2.4.11-cuda7.5/include
    OPENCV_LIB := /home/chuck/opencv-2.4.11-cuda7.5/lib

    # set the binaries that have to be built
    TARGETS := DenseTrackStab Video

    # set the build configuration set
    BUILD := release
    #BUILD := debug

    # set bin and build dirs
    BUILDDIR := .build_$(BUILD)
    BINDIR := $(BUILD)

    # libraries
    LDLIBS = $(addprefix -l, $(LIBS) $(LIBS_$(notdir $*)))
    LIBS := \
       opencv_core opencv_highgui opencv_video opencv_imgproc opencv_calib3d opencv_features2d opencv_nonfree \
       opencv_ocl \
       avformat avdevice avutil avcodec swscale

    # set some flags and compiler/linker specific commands
    CXXFLAGS = -pipe -D __STDC_CONSTANT_MACROS -D STD=std -Wall $(CXXFLAGS_$(BUILD)) -I. -I$(OPENCV_INC) -I/opt/include
    CXXFLAGS_debug := -ggdb
    CXXFLAGS_release := -O3 -DNDEBUG -ggdb
    LDFLAGS = -L$(OPENCV_LIB) -L/opt/lib -pipe -Wall $(LDFLAGS_$(BUILD))
    LDFLAGS_debug := -ggdb
    LDFLAGS_release := -O3 -ggdb

    include make/generic.mk

    Is it possible what I’m trying to do or I must give up ? Any better solution for using this software ?
    thank you